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Table 2 Candidate QTG in the Cplaq10 genomic region

From: A QTL on mouse chromosome 12 for the genetic variance in free-running circadian period between inbred strains of mice

Gene

Start (Mbp)

Diff expr

Cis-reg

ncSNP

Circ cyc

Ensembl description

Ahr

36.08

No

 

6 SNP

No

aryl-hydrocarbon receptor

Meox2

37.62

No

 

1 SNP

No

mesenchyme homeobox 2

Arl41

40.54

No

 

No

Yes

ADP-ribosylation factor-like 4A

A530016O06Rik

37.75

No

 

No

Yes

RIKEN cDNA A530016O06 gene

Ifrd1

40.71

No

 

No

Yes

interferon-related developmental regulator 1

Zpf277

40.83

Yes

Yes

2 SNP

Yes

zinc finger protein 277

  1. Start (Mbp): from NCBI Build 36.1
  2. Diff expr: Differential expression in whole brain B6 vs D2
  3. Cis-reg: Cis-regulated
  4. ncSNP: non-synonymous coding SNP
  5. Circ cyc: Circadian cycling in liver